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Balaji, P., W. - C. Feng, J. Archuleta, H. Lin, R. Kettimuthu, R. Thakur, and X. Ma, "Semantics-based Distributed I/O for mpiBLAST", ACM SIGPLAN Symposium on Principles and Practice of Parallel Programming, Salt Lake City, Utah, USA, February, 2008.
Gardner, M. K., W. - C. Feng, J. S. Archuleta, H. Lin, and X. Ma, "Parallel Genomic Sequence-Searching on an Ad-Hoc Grid: Experiences, Lessons Learned, and Implications", ACM/IEEE SC|06: The International Conference on High-Performance Computing, Networking, Storage, and Analysis, Tampa, FL, November, 2006.
Ching, A., W. - C. Feng, H. Lin, X. Ma, and A. Choudhary, "Exploring I/O Strategies for Parallel Sequence Database Search Tools with S3aSim", 15th IEEE International Symposium on High-Performance Distributed Computing (HPDC’06), Paris, France, June, 2006.
Lin, H., X. Ma, W. - C. Feng, A. Geist, and N. Samatova, "Efficient Data Handling in Comparative Genome Analysis Applications", 12th SIAM Conference on Parallel Processing for Scientific Computing, February, 2006.
Lin, H., X. Ma, P. Chandramohan, A. Geist, and N. Samatova, "{Efficient Data Access for Parallel BLAST}", IEEE International Parallel & Distributed Processing Symposium, Denver, Colorado, April, 2005.