Biblio

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2014
2013
Pu, Y., S. Lee, D. C. Samuels, L. T. Watson, and Y. Cao, "The effect of unhealthy beta-cells on insulin secretion in pancreatic islets", BMC MEDICAL GENOMICS}, vol. 6, no. 3, {236 GRAYS INN RD, FLOOR 6, LONDON WC1X 8HL, ENGLAND}, {BIOMED CENTRAL LTD}, NOV 11, 2013.
Pu, Y., S. Lee, D. C. Samuels, L. T. Watson, and Y. Cao, "The effect of unhealthy β-cells on insulin secretion in pancreatic islets", BMC Medical Genomics, vol. 6, Suppl. 3, issue Suppl 3, no. Article S6, pp. 1--13, 2013.
Li, F., and Y. Cao, "Multigrid Discretization Method for PopZ Polarization in Caulobacter Cell Cycle", The IEEE International Conference on Bioinformatics and Biomedicine (BIBM 2013), Shanghai, China, 12/2013.
Jin, F., E. Dougherty, P. Saraf, Y. Cao, and N. Ramakrishnan, "Modeling of News and Rumors on Twitter", The 7thWorkshop on Social Network Mining and Analysis (SNA KDD), Chicago, IL, 08/2013.
Jin, F., E. Dougherty, P. Saraf, Y. Cao, and N. Ramakrishnan, "Epidemiological Modeling of News and Rumors on Twitter", Proceedings of the 7th Workshop on Social Network Mining and Analysis, New York, NY, USA, ACM, pp. 8:1–8:9, 2013.
2012
Liu, Z., Y. Pu, F. Li, C. A. Shaffer, S. Hoops, J. J. Tyson, and Y. Cao, "Hybrid modeling and simulation of stochastic effects on progression through the eukaryotic cell cycle", {JOURNAL OF CHEMICAL PHYSICS}, vol. {136}, no. {3}, {CIRCULATION & FULFILLMENT DIV, 2 HUNTINGTON QUADRANGLE, STE 1 N O 1, MELVILLE, NY 11747-4501 USA}, {AMER INST PHYSICS}, {JAN 21}, 2012. Abstract
Arendt, D., and Y. Cao, "EFFECTIVE GPU ACCELERATION OF LARGE SCALE, ASYNCHRONOUS SIMULATIONS ON GRAPHS", {ADVANCES IN COMPLEX SYSTEMS}, vol. {15}, no. {8}, {5 TOH TUCK LINK, SINGAPORE 596224, SINGAPORE}, {WORLD SCIENTIFIC PUBL CO PTE LTD}, {DEC}, 2012. Abstract
Arendt, D., and Y. Cao, "EVOLUTIONARY MOTIFS FOR THE AUTOMATED DISCOVERY OF SELF-ORGANIZING DIMER AUTOMATA", {ADVANCES IN COMPLEX SYSTEMS}, vol. {15}, no. {8}, {5 TOH TUCK LINK, SINGAPORE 596224, SINGAPORE}, {WORLD SCIENTIFIC PUBL CO PTE LTD}, {DEC}, 2012. Abstract
Wang, S., and Y. Cao, "Efficient Implementation of the Hybrid Method for Stochastic Simulation of Biochemical Systems", 2012 ACM Conference on Bioinformatics, Computational Biology and Biomedicine (ACM BCB), Orlando, Florida, 2012.
2011
Song, Z., Y. Cao, and D. C. Samuels, "Replication Pauses of the Wild-Type and Mutant Mitochondrial DNA Polymerase Gamma: A Simulation Study", PLOS COMPUTATIONAL BIOLOGY, vol. 7, no. 11, 185 BERRY ST, STE 1300, SAN FRANCISCO, CA 94107 USA, PUBLIC LIBRARY SCIENCE, NOV, 2011. Abstract
Ball, D. A., T. - H. Ahn, P. Wang, K. C. Chen, Y. Cao, J. J. Tyson, J. Peccoud, and W. T. Baumann, "Stochastic exit from mitosis in budding yeast Model predictions and experimental observations", CELL CYCLE, vol. 10, no. 6, 1806 RIO GRANDE ST, AUSTIN, TX 78702 USA, LANDES BIOSCIENCE, pp. 999-1009, MAR 15, 2011. Abstract
Pu, Y., L. T. Watson, and Y. Cao, "Stiffness detection and reduction in discrete stochastic simulation of biochemical systems", JOURNAL OF CHEMICAL PHYSICS, vol. 134, no. 5, CIRCULATION & FULFILLMENT DIV, 2 HUNTINGTON QUADRANGLE, STE 1 N O 1, MELVILLE, NY 11747-4501 USA, AMER INST PHYSICS, FEB 7, 2011. Abstract
Wu, S., J. Fu, Y. Cao, and L. Petzold, "Michaelis-Menten speeds up tau-leaping under a wide range of conditions", JOURNAL OF CHEMICAL PHYSICS, vol. 134, no. 13, CIRCULATION & FULFILLMENT DIV, 2 HUNTINGTON QUADRANGLE, STE 1 N O 1, MELVILLE, NY 11747-4501 USA, AMER INST PHYSICS, APR 7, 2011. Abstract
2010
Zhang, J., L. T. Watson, C. A. Beattie, and Y. Cao, "RADIAL BASIS FUNCTION COLLOCATION FOR THE CHEMICAL MASTER EQUATION", INTERNATIONAL JOURNAL OF COMPUTATIONAL METHODS, vol. 7, no. 3, 5 TOH TUCK LINK, SINGAPORE 596224, SINGAPORE, WORLD SCIENTIFIC PUBL CO PTE LTD, pp. 477-498, SEP, 2010. Abstract
Zhang, J., L. T. Watson, and Y. Cao, "A modified uniformization method for the solution of the chemical master equation", COMPUTERS & MATHEMATICS WITH APPLICATIONS, vol. 59, no. 1, THE BOULEVARD, LANGFORD LANE, KIDLINGTON, OXFORD OX5 1GB, ENGLAND, PERGAMON-ELSEVIER SCIENCE LTD, pp. 573-584, JAN, 2010. Abstract
2009
Wendelsdorf, K. V., Z. Song, Y. Cao, and D. C. Samuels, "An Analysis of Enzyme Kinetics Data for Mitochondrial DNA Strand Termination by Nucleoside Reverse Transcription Inhibitors", PLOS COMPUTATIONAL BIOLOGY, vol. 5, no. 1, 185 BERRY ST, STE 1300, SAN FRANCISCO, CA 94107 USA, PUBLIC LIBRARY SCIENCE, JAN, 2009. Abstract
Gillespie, D. T., Y. Cao, K. R. Sanft, and L. R. Petzold, "The subtle business of model reduction for stochastic chemical kinetics", JOURNAL OF CHEMICAL PHYSICS, vol. 130, no. 6, CIRCULATION & FULFILLMENT DIV, 2 HUNTINGTON QUADRANGLE, STE 1 N O 1, MELVILLE, NY 11747-4501 USA, AMER INST PHYSICS, FEB 14, 2009. Abstract