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Rahman, A., C. L. Poirel, D. J. Badger, and T. M. Murali, "Reverse Engineering Molecular Hypergraphs", Proceedings of the ACM Conference on Bioinformatics, Computational Biology, and Biomedicine, Chicago IL, Association for Computing Machinery, 10/2012.
Murali, T. M., "Guest Editor's Introduction: Computationally Driven Experimental Biology", Computer, vol. 45, Los Alamitos, CA, USA, IEEE Computer Society, pp. 22-23, 2012. Abstract
Poirel, C. L., C. C. Owens, and T. M. Murali, "Network-based functional enrichment", BMC Bioinformatics, vol. 12, no. Suppl 13, pp. S9+, 2011.
Murali, T. M., M. D. Dyer, D. Badger, B. M. Tyler, and M. G. Katze, "Network-Based Prediction and Analysis of HIV Dependency Factors", PLoS Comput Biol, vol. 7, no. 9: Public Library of Science, pp. e1002164+, 2011.
Dyer, M. D., T. M. Murali, and B. W. Sobral, "Supervised learning and prediction of physical interactions between human and {HIV} proteins.", Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases, vol. 11, no. 5, pp. 917–923, 2011.
Lasher, C. D., C. L. Poirel, and T. M. Murali, "Networks in Computational Systems Biology", Problem Solving Handbook in Computational Biology and Bioinformatics, second edition: Springer-Verlag, 2010.
III, C. C. O., T. M. Murali, and N. Ramakrishnan, "Capturing Truthiness: Mining Truth Tables in Binary Datasets", Proceedings of the 24th Annual ACM Symposium on Applied Computing (SAC'09; Data Mining Track): ACM, pp. 1467–1474, March, 2009.
Murali, T. M., and S. Aluru, "Computational Systems Biology", Algorithms and Theory of Computation Handbook, second edition: Chapman & Hall/CRC Press, 2009.
Kidane, Y., T. M. Murali, and O. Crasta, "Cross-conditional Analysis of Host Response to Pathogen Infection", 17th Annual International Conference on Intelligent Systems for Molecular Biology, 06/2009.
Driscoll, T., M. D. Dyer, T. M. Murali, and B. W. Sobral, "PIG–the pathogen interaction gateway.", Nucleic Acids Res, vol. 37, no. Database issue, pp. D647-50, 2009. Abstract
Dyer, M. D., T. M. Murali, and B. W. Sobral, "Computational prediction of host-pathogen protein-protein interactions.", Bioinformatics, vol. 23, no. 13, Genetics, Bioinformatics and Computational Biology Program, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061, USA., pp. i159-66, 2007. Abstract
Shoja, V., T. M. Murali, and L. Zhang, "Expression Divergence of Tandemly Arrayed Genes in Human and Mouse", Comparative and Functional Genomics, vol. 2007, pp. Article ID 60964, 8 pages, 2007.
Murali, T. M., and C. G. Rivera, "Network Legos: Building Blocks of Cellular Wiring Diagrams", Proceedings of the Eleventh Annual International Conference on Research in Computational Molecular Biology (RECOMB), pp. 47–61, 2007.