Multiscale Modeling and Computation

Contact: Yang Cao

Wang, P., R. Randhawa, C. A. Shaffer, Y. Cao, and W. T. Baumann, "Converting Macromolecular Regulatory Models from Deterministic to Stochastic Formulation", Proceedings of High Performance Computing and Simulation 2008 (HPCS 2008), pp. 385–392, April, 2008.
Cao, Y., and L. Petzold, "Slow Scale Tau-leaping Method", Computer Methods in Applied Mechanics and Engineering, 2008.
Cao, Y., and Z. Liu, "The detailed comparison between StochSim and SSA", The first q-bio conference on cellular information processing, Santa Fe, New Mexico, August, 2007.
Cao, Y., "The adaptive explicit-implicit tau-leap method", SCICADE (International Conference on SCIenti c Computation And Di erential Equations), Santa Malo, France, July, 2007.
Cao, Y., A. Hall, L. H, and L. Petzold, "StochKit, a new stochastic simulation toolkit", Sixth International Conference on Systems Biology, Boston, Massachusetts, October, 2005.
Cao, Y., and L. Petzold, "Trapezoidal tau-lepaing formula for the stochastic simulation of biochemical systems", Proceedings of Foundations of Systems Biology in Engineering (FOSBE 2005), pp. pp 149- 152, August, 2005.
Cao, Y., and L. Petzold, "Measurement of error in stochastic simulation: when the mean and the variance are not enough", 4th SIAM conference on Computational Science and Engineering, February, 2005.
Cao, Y., S. Lampoudi, H. Li, and L. Petzold, "A software package for discrete stochastic simulation of chemically reacting systems", 4th SIAM conference on Computational Science and Engineering, February, 2005.
Petzold, L., R. Serban, S. Li, S. Raha, and Y. Cao, "sensitivity analysis and design optimization of di erential-algebraic equation systems", NATO Advanced Research Workshop on Computational Aspects of Nonlinear Structural Systems with Large Rigid Body Motion, 2001.
Cao, Y., S. Li, and L. Petzold, "Adjoint sensitivity analysis for DAE systems", NSF-KDI/IGPP W orkshop 2000 on Accurate Simulation and Modelling of Physical Systems, San Diego, 2000.